Stem-loop fru-mir-181b

Accession

MI0003331

Description

Fugu rubripes fru-mir-181b precursor miRNA

Literature search

1 open access papers mention fru-mir-181b
(3 sentences)

Sequence

197203 reads, 2462.0 reads per million, 12 experiments

aaaggucacaaucAACAUUCAUUGCUGUCGGUGGGuuuaacuguauggaagagCUCACUGAACGAUGAAUGCAAcugugucccagau
...((.((((.....(((((((((...(((((((((((..((....))..))))))))))).)))))))))....)))).)).....

Structure

--aaa  u    aucAA         CUG           aa  g 
     gg caca     CAUUCAUUG   UCGGUGGGuuu  cu u
     || ||||     |||||||||   |||||||||||  ||  
     cc gugu     GUAAGUAGC   AGUCACUCgag  gg a
uagac  u    -cAAC         --A           aa  u 

Annotation confidence High

Comments

This Fugu miRNA sequence is predicted based on homology with a verified zebrafish sequence (Mihaela Zavolan, personal communication).

Genome context

ref|NC_042304.1|: 11686718-11686804 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from fru-mir-181b

Mature fru-miR-181b-5p

• Accession: MIMAT0003003
• Description: Fugu rubripes fru-miR-181b-5p mature miRNA
• Sequence: 14 - AACAUUCAUUGCUGUCGGUGGG - 35
• Evidence: not_experimental

Mature fru-miR-181b-3p

• Accession: MIMAT0052870
• Description: Fugu rubripes fru-miR-181b-3p mature miRNA
• Sequence: 54 - CUCACUGAACGAUGAAUGCAA - 74
• Evidence: not_experimental

References