Stem-loop tni-mir-181b-1

Accession

MI0003332

Description

Tetraodon nigroviridis tni-mir-181b-1 precursor miRNA

Sequence

26393 reads, 966.0 reads per million, 3 experiments

aaaggucacaaucAACAUUCAUUGCUGUCGGUGGGuuuaacuguauggaagagCUCACUGAACGAUGAAUGCAacugugucccagau
...((.((((.....(((((((((...(((((((((((..((....))..))))))))))).)))))))))....)))).)).....

Structure

--aaa  u    aucAA         CUG           aa  g 
     gg caca     CAUUCAUUG   UCGGUGGGuuu  cu u
     || ||||     |||||||||   |||||||||||  ||  
     cc gugu     GUAAGUAGC   AGUCACUCgag  gg a
uagac  u    -caAC         --A           aa  u 

Annotation confidence Medium

Comments

This Tetraodon miRNA sequence is predicted based on homology with a verified zebrafish sequence (Mihaela Zavolan, personal communication).

Genome context

1: 18565043-18565129 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from tni-mir-181b-1

Mature tni-miR-181b-5p

• Accession: MIMAT0003004
• Description: Tetraodon nigroviridis tni-miR-181b-5p mature miRNA
• Sequence: 14 - AACAUUCAUUGCUGUCGGUGGG - 35
• Evidence: not_experimental

Mature tni-miR-181b-1-3p

• Accession: MIMAT0052953
• Description: Tetraodon nigroviridis tni-miR-181b-1-3p mature miRNA
• Sequence: 54 - CUCACUGAACGAUGAAUGCA - 73
• Evidence: not_experimental

References