Stem-loop fru-mir-181a-1

Accession

MI0003333

Description

Fugu rubripes fru-mir-181a-1 precursor miRNA

Sequence

gcucgccccggugAACAUUCAACGCUGUCGGUGAGUuugagcuaaauuggaaaaACCAUCGACCGUUGAUUGUACCccguggc
....(((.(((.(.(((.((((((..(((((((.((((...(......)...))))))))))))))))).))).).))).)))

Structure

gcuc   c   u A   U      CU       A    gag ua 
    gcc cgg g ACA UCAACG  GUCGGUG GUuu   c  a
    ||| ||| | ||| ||||||  ||||||| ||||   |   
    cgg gcc C UGU AGUUGC  CAGCUAC CAaa   g  a
----   u   C A   U      --       -    aag uu 

Annotation confidence Not enough data

Comments

This Fugu miRNA sequence is predicted based on homology with a verified zebrafish sequence (Mihaela Zavolan, personal communication).

Genome context

HE602554.1: 9660091-9660173 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from fru-mir-181a-1

Mature fru-miR-181a-5p

• Accession: MIMAT0003111
• Description: Fugu rubripes fru-miR-181a-5p mature miRNA
• Sequence: 14 - AACAUUCAACGCUGUCGGUGAGU - 36
• Evidence: not_experimental

Mature fru-miR-181a-3p

• Accession: MIMAT0003005
• Description: Fugu rubripes fru-miR-181a-3p mature miRNA
• Sequence: 55 - ACCAUCGACCGUUGAUUGUACC - 76
• Evidence: not_experimental

References