Stem-loop tni-mir-181a-1

Accession

MI0003334

Description

Tetraodon nigroviridis tni-mir-181a-1 precursor miRNA

Sequence

52018 reads, 1905.0 reads per million, 3 experiments

gcucgccccggugAACAUUCAACGCUGUCGGUGAGUUUgagccaaauuggaaaaACCAUCGACCGUUGAUUGUACcccguggc
....(((.(((.(.(((.((((((..(((((((.((((...(((...)))..))))))))))))))))).))).).))).)))

Structure

gcuc   c   u A   U      CU       A    gag   a 
    gcc cgg g ACA UCAACG  GUCGGUG GUUU   cca  
    ||| ||| | ||| ||||||  ||||||| ||||   ||| a
    cgg gcc C UGU AGUUGC  CAGCUAC CAaa   ggu  
----   u   c A   U      --       -    -aa   u 

Annotation confidence High

Comments

This Tetraodon miRNA sequence is predicted based on homology with a verified zebrafish sequence (Mihaela Zavolan, personal communication).

Genome context

1: 18565254-18565336 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from tni-mir-181a-1

Mature tni-miR-181a-5p

• Accession: MIMAT0003050
• Description: Tetraodon nigroviridis tni-miR-181a-5p mature miRNA
• Sequence: 14 - AACAUUCAACGCUGUCGGUGAGUUU - 38
• Evidence: not_experimental

Mature tni-miR-181a-3p

• Accession: MIMAT0003006
• Description: Tetraodon nigroviridis tni-miR-181a-3p mature miRNA
• Sequence: 55 - ACCAUCGACCGUUGAUUGUAC - 75
• Evidence: not_experimental

References