Stem-loop fru-mir-7

Accession

MI0003337

Description

Fugu rubripes fru-mir-7 precursor miRNA

Literature search

2 open access papers mention fru-mir-7
(18 sentences)

Sequence

1424438 reads, 13011.0 reads per million, 12 experiments

cccugucugcugcugugUGGAAGACUAGUGAUUUUGUUguuuuuaguuagaucaacugaCAACAAAUCACAGUCUGCCAAAcagcacaggc
....(((((.((((((.(((.(((((.(((((((.((((((...((((.....)))))))))))))))))))))).))).)))))))))))

Structure

cccu     c      g   A     A       U      uuu    a 
    gucug ugcugu UGG AGACU GUGAUUU GUUguu   aguu g
    ||||| |||||| ||| ||||| ||||||| ||||||   |||| a
    cggac acgacA ACC UCUGA CACUAAA CAACag   ucaa u
----     -      A   G     -       -      ---    c 

Annotation confidence High

Comments

This Fugu miRNA sequence is predicted based on homology with a verified zebrafish sequence (Mihaela Zavolan, personal communication).

Genome context

ref|NC_042305.1|: 12168172-12168262 [-]

Mature fru-miR-7-5p

• Accession: MIMAT0003009
• Description: Fugu rubripes fru-miR-7-5p mature miRNA
• Sequence: 18 - UGGAAGACUAGUGAUUUUGUU - 38
• Evidence: not_experimental

Mature fru-miR-7-3p

• Accession: MIMAT0052873
• Description: Fugu rubripes fru-miR-7-3p mature miRNA
• Sequence: 60 - CAACAAAUCACAGUCUGCCAAA - 81
• Evidence: not_experimental

References