Stem-loop tni-let-7j

Accession

MI0003342

Description

Tetraodon nigroviridis tni-let-7j precursor miRNA

Sequence

6276 reads, 230.0 reads per million, 3 experiments

gucUGAGGUAGUUUUUUGUACAGUUugagggucugugauucugccccauacaggagcuaaCUGUACAAGUGACUGCCUUGCc
....(((((((((.(((((((((((..((((((...))))))((.((.....)).)).))))))))))).)))))))))...

Structure

gucU         U           --------------ug      u 
    GAGGUAGUU UUUGUACAGUU                aggguc  
    ||||||||| |||||||||||                |||||| g
    UUCCGUCAG GAACAUGUCaa                ucuuag  
-cCG         U           ucgaggacauaccccg      u 

Annotation confidence High

Comments

This Tetraodon miRNA sequence is predicted based on homology with a verified zebrafish sequence (Mihaela Zavolan, personal communication).

Genome context

11: 5230979-5231060 [+]

Mature tni-let-7j-5p

• Accession: MIMAT0003014
• Description: Tetraodon nigroviridis tni-let-7j-5p mature miRNA
• Sequence: 4 - UGAGGUAGUUUUUUGUACAGUU - 25
• Evidence: not_experimental

Mature tni-let-7j-3p

• Accession: MIMAT0052955
• Description: Tetraodon nigroviridis tni-let-7j-3p mature miRNA
• Sequence: 61 - CUGUACAAGUGACUGCCUUGC - 81
• Evidence: not_experimental

References