Stem-loop fru-mir-30c

Accession

MI0003350

Description

Fugu rubripes fru-mir-30c precursor miRNA

Sequence

1188390 reads, 16011.0 reads per million, 12 experiments

ucaggaagUGUAAACAUCCUACACUCUCGGcguccgcccccugguggCCGGGGGUGGGACUGUUUGCACUgccugacu
(((((.(((((((((((((..((((((((((...((((....))))))))))))))))).)))))))))).)))))..

Structure

--     a          -   UA          guc    c 
  ucagg agUGUAAACA UCC  CACUCUCGGc   cgcc c
  ||||| |||||||||| |||  ||||||||||   ||||  
  agucc UCACGUUUGU AGG  GUGGGGGCCg   gugg c
uc     g          C   --          ---    u 

Annotation confidence High

Comments

This Fugu miRNA sequence is predicted based on homology with a verified zebrafish sequence (Mihaela Zavolan, personal communication).

Genome context

ref|NC_042288.1|: 8899449-8899526 [-]

Mature fru-miR-30c-5p

• Accession: MIMAT0003022
• Description: Fugu rubripes fru-miR-30c-5p mature miRNA
• Sequence: 9 - UGUAAACAUCCUACACUCUCGG - 30
• Evidence: not_experimental

Mature fru-miR-30c-3p

• Accession: MIMAT0052880
• Description: Fugu rubripes fru-miR-30c-3p mature miRNA
• Sequence: 48 - CCGGGGGUGGGACUGUUUGCACU - 70
• Evidence: not_experimental

References