Stem-loop tni-mir-30c

Accession

MI0003351

Description

Tetraodon nigroviridis tni-mir-30c precursor miRNA

Sequence

24324 reads, 890.0 reads per million, 3 experiments

uucagggagUGUAAACAUCCUACACUCUCGGcguccgcccccugguggCCGGGGGUGGGACUGUUUGCACUgccuggcu
.(((((.(((((((((((((..((((((((((...((((....))))))))))))))))).)))))))))).)))))..

Structure

-u     g          -   UA          guc    c 
  ucagg agUGUAAACA UCC  CACUCUCGGc   cgcc c
  ||||| |||||||||| |||  ||||||||||   ||||  
  ggucc UCACGUUUGU AGG  GUGGGGGCCg   gugg c
uc     g          C   --          ---    u 

Annotation confidence High

Comments

This Tetraodon miRNA sequence is predicted based on homology with a verified zebrafish sequence (Mihaela Zavolan, personal communication).

Genome context

17: 8584371-8584449 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from tni-mir-30c

Mature tni-miR-30c-5p

• Accession: MIMAT0003023
• Description: Tetraodon nigroviridis tni-miR-30c-5p mature miRNA
• Sequence: 10 - UGUAAACAUCCUACACUCUCGG - 31
• Evidence: not_experimental

Mature tni-miR-30c-3p

• Accession: MIMAT0052960
• Description: Tetraodon nigroviridis tni-miR-30c-3p mature miRNA
• Sequence: 49 - CCGGGGGUGGGACUGUUUGCACU - 71
• Evidence: not_experimental

References