Stem-loop fru-mir-214

Accession

MI0003356

Description

Fugu rubripes fru-mir-214 precursor miRNA

Literature search

2 open access papers mention fru-mir-214
(2 sentences)

Sequence

248100 reads, 4221.0 reads per million, 12 experiments

caggaugagacuguuguggugugucUGCCUGUCUACACUUGCUGUGCAGAccuucugcuccuguACAGCAGGCACAGACAGGCAGacagauggcagccc
............(((((.((.(((((((((((((...((((((((((((...........))))))))))))...))))))))))))).)).)))))..

Structure

caggaugagacu     g  g             ACA            Accu 
            guugu gu ugucUGCCUGUCU   CUUGCUGUGCAG    u
            ||||| || |||||||||||||   ||||||||||||    c
            cgacg ua acaGACGGACAGA   GGACGACAuguc    u
----------cc     g  g             CAC            cucg 

Annotation confidence High

Comments

This Fugu miRNA sequence is predicted based on homology with a verified zebrafish sequence (Mihaela Zavolan, personal communication).

Genome context

ref|NC_042304.1|: 5586137-5586235 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from fru-mir-214

Mature fru-miR-214-5p

• Accession: MIMAT0052882
• Description: Fugu rubripes fru-miR-214-5p mature miRNA
• Sequence: 26 - UGCCUGUCUACACUUGCUGUGCAGA - 50
• Evidence: not_experimental

Mature fru-miR-214-3p

• Accession: MIMAT0003026
• Description: Fugu rubripes fru-miR-214-3p mature miRNA
• Sequence: 65 - ACAGCAGGCACAGACAGGCAG - 85
• Evidence: not_experimental

References