Stem-loop fru-mir-135b

Accession

MI0003362

Description

Fugu rubripes fru-mir-135b precursor miRNA

Sequence

223022 reads, 2020.0 reads per million, 12 experiments

augcccagugcacugUAUGGCUUUUUAUUCCUAUCUGacuguacugauaguucaUAUAGGGAUGGAAGCCAUGCAcugcgcug
.....(((((((.((((((((((((.((((((((.(((((((....)))).))).)))))))))))))))))))).)))))))

Structure

augcc       c            U        C   -    a 
     cagugca ugUAUGGCUUUU AUUCCUAU UGa cugu c
     ||||||| |||||||||||| |||||||| ||| ||||  
     gucgcgu ACGUACCGAAGG UAGGGAUA acu gaua u
-----       c            -        U   u    g 

Annotation confidence High

Comments

This Fugu miRNA sequence is predicted based on homology with a verified zebrafish sequence (Mihaela Zavolan, personal communication).

Genome context

ref|NC_042287.1|: 6322579-6322661 [+]

Mature fru-miR-135b-5p

• Accession: MIMAT0003030
• Description: Fugu rubripes fru-miR-135b-5p mature miRNA
• Sequence: 16 - UAUGGCUUUUUAUUCCUAUCUG - 37
• Evidence: not_experimental

Mature fru-miR-135b-3p

• Accession: MIMAT0052884
• Description: Fugu rubripes fru-miR-135b-3p mature miRNA
• Sequence: 55 - UAUAGGGAUGGAAGCCAUGCA - 75
• Evidence: not_experimental

References