Stem-loop fru-mir-196b

Accession

MI0003365

Description

Fugu rubripes fru-mir-196b precursor miRNA

Literature search

2 open access papers mention fru-mir-196b
(3 sentences)

Sequence

4850 reads, 63.0 reads per million, 12 experiments

ugugauaUAGGUAGUUUCAAGUUGUUGGGcugaacucuugugaucacAGGAACCUGAAACUGCCUGAGU
.......((((((((((((.(((.(((......((....)).....))).))).))))))))))))...

Structure

ugugaua            A   G   GGcuga  u 
       UAGGUAGUUUCA GUU UUG      ac c
       |||||||||||| ||| |||      ||  
       GUCCGUCAAAGU CAA GAc      ug u
----UGA            C   G   -acuag  u 

Annotation confidence Medium

Comments

This Fugu miRNA sequence is predicted based on homology with a verified zebrafish sequence (Mihaela Zavolan, personal communication).

Genome context

ref|NC_042289.1|: 2014657-2014725 [+]

Mature fru-miR-196b-5p

• Accession: MIMAT0003033
• Description: Fugu rubripes fru-miR-196b-5p mature miRNA
• Sequence: 8 - UAGGUAGUUUCAAGUUGUUGGG - 29
• Evidence: not_experimental

Mature fru-miR-196b-3p

• Accession: MIMAT0052885
• Description: Fugu rubripes fru-miR-196b-3p mature miRNA
• Sequence: 48 - AGGAACCUGAAACUGCCUGAGU - 69
• Evidence: not_experimental

References