Stem-loop tni-mir-196b

Accession

MI0003366

Description

Tetraodon nigroviridis tni-mir-196b precursor miRNA

Literature search

2 open access papers mention tni-mir-196b
(3 sentences)

Sequence

31 reads, 1.0 reads per million, 3 experiments

ugugaugUAGGUAGUUUCAAGUUGUUGGGcuaaacuuuggugaucacaggaaccugaaacugcccgauu
.........((((((((((.(((.(((......((....)).....))).))).)))))))))).....

Structure

ugugaugUA          A   G   GGcuaa  u 
         GGUAGUUUCA GUU UUG      ac u
         |||||||||| ||| |||      ||  
         ccgucaaagu caa gac      ug u
----uuagc          c   g   -acuag  g 

Annotation confidence Not enough data

Comments

This Tetraodon miRNA sequence is predicted based on homology with a verified zebrafish sequence (Mihaela Zavolan, personal communication).

Genome context

Un_random: 5576388-5576456 [-]

Mature tni-miR-196b-5p

• Accession: MIMAT0003034
• Description: Tetraodon nigroviridis tni-miR-196b-5p mature miRNA
• Sequence: 8 - UAGGUAGUUUCAAGUUGUUGGG - 29
• Evidence: not_experimental

References