Stem-loop tni-mir-212-1

Accession

MI0003384

Description

Tetraodon nigroviridis tni-mir-212-1 precursor miRNA

Sequence

109 reads, 4.0 reads per million, 3 experiments

ggucagcgcaucaacACCUUGGCUCUAGACUGCUUACUGcuaacaccgcucugaaguacagUAACAGUCUACAGUCAUGGCUacugacgccuggc
.(((((.((.(((...((.(((((.(((((((.((((((...((...........)).))))))))))))).))))).))....))).)))))))

Structure

g     c  a   -acA  U     C       C      cua  accg 
 gucag gc uca    CC UGGCU UAGACUG UUACUG   ac    c
 ||||| || |||    || ||||| ||||||| ||||||   ||    u
 cgguc cg agu    GG ACUGA AUCUGAC AAUgac   ug    c
-     -  c   caUC  U     C       -      --a  aagu 

Annotation confidence High

Comments

This Tetraodon miRNA sequence is predicted based on homology with a verified zebrafish sequence (Mihaela Zavolan, personal communication).

Genome context

Un_random: 63608290-63608384 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from tni-mir-212-1

Mature tni-miR-212-1-5p

• Accession: MIMAT0052968
• Description: Tetraodon nigroviridis tni-miR-212-1-5p mature miRNA
• Sequence: 16 - ACCUUGGCUCUAGACUGCUUACUG - 39
• Evidence: not_experimental

Mature tni-miR-212-3p

• Accession: MIMAT0003048
• Description: Tetraodon nigroviridis tni-miR-212-3p mature miRNA
• Sequence: 62 - UAACAGUCUACAGUCAUGGCU - 82
• Evidence: not_experimental

References