Stem-loop tni-mir-181a-2

Accession

MI0003386

Description

Tetraodon nigroviridis tni-mir-181a-2 precursor miRNA

Sequence

51413 reads, 1882.0 reads per million, 3 experiments

caguuuuuucaggucuuuggggAACAUUCAACGCUGUCGGUGAGUUUggugacucagaaaaaaACCAUCGAGCGUUGAGUGUaccuuuagg
..............(((.((((.(((((((((((..((((((.((((..(........)..))))))))))))))))))))).)))).)))

Structure

caguuuuuucaggu   u    A           UG      A    gg gac 
              cuu gggg ACAUUCAACGC  UCGGUG GUUU  u   u
              ||| |||| |||||||||||  |||||| ||||  |    
              gga uucc UGUGAGUUGCG  AGCUAC CAaa  a   c
--------------   u    a           --      -    aa aga 

Annotation confidence Medium

Comments

This Tetraodon miRNA sequence is predicted based on homology with a verified mammalian sequence (Mihaela Zavolan, personal communication).

Genome context

Un_random: 58989020-58989110 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from tni-mir-181a-2

Mature tni-miR-181a-5p

• Accession: MIMAT0003050
• Description: Tetraodon nigroviridis tni-miR-181a-5p mature miRNA
• Sequence: 23 - AACAUUCAACGCUGUCGGUGAGUUU - 47
• Evidence: not_experimental

Mature tni-miR-181a-2-3p

• Accession: MIMAT0052954
• Description: Tetraodon nigroviridis tni-miR-181a-2-3p mature miRNA
• Sequence: 64 - ACCAUCGAGCGUUGAGUGU - 82
• Evidence: not_experimental

References