Stem-loop dre-mir-181a-2

Accession

MI0003387

Description

Danio rerio dre-mir-181a-2 precursor miRNA

Literature search

18 open access papers mention dre-mir-181a-2
(68 sentences)

Sequence

779474 reads, 50935 reads per million, 11 experiments

uuggugAACAUUCAACGCUGUCGGUGAGUuuugcgcuucuguaacaaACCAUCGACCGUUGACUGUACCcugagggugg
.......(((.((((((..(((((((.(((((((......)))..))))))))))))))))).)))((((...))))..

Structure

------uuggugA   U      CU       A    --   gc 
             ACA UCAACG  GUCGGUG GUuu  ugc  u
             ||| ||||||  ||||||| ||||  |||   
             UGU AGUUGC  CAGCUAC CAaa  aug  u
ggugggagucCCA   C      --       -    ca   uc 

Annotation confidence High

Comments

This zebrafish miRNA sequence is predicted based on homology with a verified mammalian sequence (Mihaela Zavolan, personal communication).

Genome context

chr8: 53023539-53023617 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from dre-mir-181a-2

Mature dre-miR-181a-5p

• Accession: MIMAT0001623
• Description: Danio rerio dre-miR-181a-5p mature miRNA
• Sequence: 7 - AACAUUCAACGCUGUCGGUGAGU - 29
• Evidence: not_experimental

Mature dre-miR-181a-2-3p

• Accession: MIMAT0032007
• Description: Danio rerio dre-miR-181a-2-3p mature miRNA
• Sequence: 48 - ACCAUCGACCGUUGACUGUACC - 69
• Evidence: not_experimental

References