Stem-loop fru-mir-29a-1

Accession

MI0003392

Description

Fugu rubripes fru-mir-29a-1 precursor miRNA

Sequence

16649 reads, 163.0 reads per million, 12 experiments

agguugACUGAUUUCUUUUGGUGUUCAGAguccaauucuguuucUAGCACCAUUUGAAAUCGGUUAcagug
....(((((((((((...(((((((((((((...)))))).....)))))))...))))))))))).....

Structure

-aggu           UUU       -----      c 
     ugACUGAUUUC   UGGUGUU     CAGAgu  
     |||||||||||   |||||||     |||||| c
     AUUGGCUAAAG   ACCACGA     gucuua  
gugac           UUU       Ucuuu      a 

Annotation confidence Medium

Comments

This Fugu miRNA sequence is predicted based on homology with a verified zebrafish sequence (Mihaela Zavolan, personal communication).

Genome context

ref|NC_042287.1|: 16127827-16127897 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from fru-mir-29a-1

Mature fru-miR-29a-1-5p

• Accession: MIMAT0052894
• Description: Fugu rubripes fru-miR-29a-1-5p mature miRNA
• Sequence: 7 - ACUGAUUUCUUUUGGUGUUCAGA - 29
• Evidence: not_experimental

Mature fru-miR-29a-3p

• Accession: MIMAT0003053
• Description: Fugu rubripes fru-miR-29a-3p mature miRNA
• Sequence: 45 - UAGCACCAUUUGAAAUCGGUUA - 66
• Evidence: not_experimental

References