Stem-loop tni-mir-29a-1

Accession

MI0003393

Description

Tetraodon nigroviridis tni-mir-29a-1 precursor miRNA

Literature search

1 open access papers mention tni-mir-29a-1
(3 sentences)

Sequence

178702 reads, 6546.0 reads per million, 3 experiments

agguugACCGAUUUCUUUUGGUGUUCAGAguccaauucuguuucUAGCACCAUUUGAAAUCGGUUAcaguga
....(((((((((((...(((((((((((((...)))))).....)))))))...)))))))))))......

Structure

--aggu           UUU       -----      c 
      ugACCGAUUUC   UGGUGUU     CAGAgu  
      |||||||||||   |||||||     |||||| c
      AUUGGCUAAAG   ACCACGA     gucuua  
agugac           UUU       Ucuuu      a 

Annotation confidence Medium

Comments

This Tetraodon miRNA sequence is predicted based on homology with a verified zebrafish sequence (Mihaela Zavolan, personal communication).

Genome context

9: 9583403-9583474 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from tni-mir-29a-1

Mature tni-miR-29a-1-5p

• Accession: MIMAT0052969
• Description: Tetraodon nigroviridis tni-miR-29a-1-5p mature miRNA
• Sequence: 7 - ACCGAUUUCUUUUGGUGUUCAGA - 29
• Evidence: not_experimental

Mature tni-miR-29a-3p

• Accession: MIMAT0003054
• Description: Tetraodon nigroviridis tni-miR-29a-3p mature miRNA
• Sequence: 45 - UAGCACCAUUUGAAAUCGGUUA - 66
• Evidence: not_experimental

References