Stem-loop tni-mir-29b-2

Accession

MI0003396

Description

Tetraodon nigroviridis tni-mir-29b-2 precursor miRNA

Literature search

1 open access papers mention tni-mir-29b-2
(3 sentences)

Sequence

86170 reads, 3157.0 reads per million, 3 experiments

cucuuggaaGCUGGUUUCAGGUGGUGGCUUAGAguauugucaucuaucUAGCACCAUUUGAAAUCAGUGUucuugggg
(((..(((.(((((((((((((((((.((((((.........))))...))))))))))))))))))).)))..))).

Structure

-   uu   a                 G  ---    gua 
 cuc  gga GCUGGUUUCAGGUGGUG CU   UAGA   u
 |||  ||| ||||||||||||||||| ||   ||||   u
 ggg  cuU UGACUAAAGUUUACCAC GA   aucu   g
g   uu   G                 -  Ucu    acu 

Annotation confidence High

Comments

This Tetraodon miRNA sequence is predicted based on homology with a verified zebrafish sequence (Mihaela Zavolan, personal communication).

Genome context

9: 9583198-9583275 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from tni-mir-29b-2

Mature tni-miR-29b-2-5p

• Accession: MIMAT0052971
• Description: Tetraodon nigroviridis tni-miR-29b-2-5p mature miRNA
• Sequence: 10 - GCUGGUUUCAGGUGGUGGCUUAGA - 33
• Evidence: not_experimental

Mature tni-miR-29b-3p

• Accession: MIMAT0003056
• Description: Tetraodon nigroviridis tni-miR-29b-3p mature miRNA
• Sequence: 49 - UAGCACCAUUUGAAAUCAGUGU - 70
• Evidence: not_experimental

References