Accession
MI0003397
Description
Fugu rubripes
fru-mir-133 precursor miRNA
Sequence
142475
reads,
2325.0
reads per million, 12 experiments
aaugcuuugcuaaAGCUGGUAAAAUGGAACCAAAUcaccucuugaauggaUUUGGUCCCCUUCAACCAGCUGuagcuaugcuuugau
...((...((((.(((((((..((.((.((((((((............)))))))).)).))..))))))).))))...))......
...((...((((.(((((((..((.((.((((((((............)))))))).)).))..))))))).))))...))......
Structure
---aau uuu a AA U A accuc
gc gcua AGCUGGU AA GG ACCAAAUc u
|| |||| ||||||| || || ||||||||
cg cgau UCGACCA UU CC UGGUUUag u
uaguuu uau G AC C C guaag
Annotation confidence
High
Do you think this miRNA is real?
Comments
This Fugu miRNA sequence is predicted based on homology with a verified zebrafish sequence (Mihaela Zavolan, personal communication).
Genome context
ref|NC_042306.1|: 2871387-2871473 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from fru-mir-133
| Name | Accession | Chromosome | Start | End | Strand | Confidence |
|---|
Database links
Mature fru-miR-133-5p
| Accession | MIMAT0052898 |
| Description | Fugu rubripes fru-miR-133-5p mature miRNA |
| Sequence | 14 - AGCUGGUAAAAUGGAACCAAAU - 35 |
| Evidence | not_experimental |
Mature fru-miR-133-3p
| Accession | MIMAT0003057 |
| Description | Fugu rubripes fru-miR-133-3p mature miRNA |
| Sequence | 51 - UUUGGUCCCCUUCAACCAGCUG - 72 |
| Evidence | not_experimental |
References
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