Stem-loop tni-mir-133a

Accession

MI0003398

Description

Tetraodon nigroviridis tni-mir-133a precursor miRNA

Sequence

21 reads, 1.0 reads per million, 3 experiments

ugacuccacaaugcuuugcuaaagcugguaaaauggaaccaaaucaccucuugaauggaUUUGGUCCCCUUCAACCAGCUGuagcua
.................((((.(((((((..((.((.((((((((............)))))))).)).))..))))))).))))..

Structure

ugacuccacaaugcuuu    a       aa  u  a        accuc 
                 gcua agcuggu  aa gg accaaauc     u
                 |||| |||||||  || || ||||||||      
                 cgau UCGACCA  UU CC UGGUUUag     u
---------------au    G       AC  C  C        guaag 

Annotation confidence Not enough data

Comments

This Tetraodon miRNA sequence is predicted based on homology with a verified zebrafish sequence (Mihaela Zavolan, personal communication).

Genome context

15_random: 1420860-1420946 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from tni-mir-133a

Mature tni-miR-133a-3p

• Accession: MIMAT0003058
• Description: Tetraodon nigroviridis tni-miR-133a-3p mature miRNA
• Sequence: 60 - UUUGGUCCCCUUCAACCAGCUG - 81
• Evidence: not_experimental

References