Stem-loop fru-mir-132

Accession

MI0003399

Description

Fugu rubripes fru-mir-132 precursor miRNA

Sequence

124561 reads, 1125.0 reads per million, 12 experiments

gucuccaugguuACCGUGGCAUUAGAUUGUUACUguagcaacugcaccaguggUAACAGUCUACAGCCAUGGUCGcuagggggca
((((((.((((.((((((((..((((((((((((((.((....))))....))))))))))))..)))))))).)))))))))).

Structure

-      a    u        AU            ----  a  a 
 gucucc uggu ACCGUGGC  UAGAUUGUUACU    gu gc a
 |||||| |||| ||||||||  ||||||||||||    || ||  
 cggggg aucG UGGUACCG  AUCUGACAAUgg    ca cg c
a      -    C        AC            ugac  -  u 

Annotation confidence High

Comments

This Fugu miRNA sequence is predicted based on homology with a verified zebrafish sequence (Mihaela Zavolan, personal communication).

Genome context

ref|NC_042295.1|: 10999572-10999656 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from fru-mir-132

Mature fru-miR-132-5p

• Accession: MIMAT0052899
• Description: Fugu rubripes fru-miR-132-5p mature miRNA
• Sequence: 13 - ACCGUGGCAUUAGAUUGUUACU - 34
• Evidence: not_experimental

Mature fru-miR-132-3p

• Accession: MIMAT0003059
• Description: Fugu rubripes fru-miR-132-3p mature miRNA
• Sequence: 54 - UAACAGUCUACAGCCAUGGUCG - 75
• Evidence: not_experimental

References