Stem-loop tni-mir-132-1

Accession

MI0003400

Description

Tetraodon nigroviridis tni-mir-132-1 precursor miRNA

Literature search

1 open access papers mention tni-mir-132-1
(5 sentences)

Sequence

86 reads, 3.0 reads per million, 3 experiments

gucuccaugguuACCGUGGCAUUAGAUUGUUACUguagcaacugcaccagcggUAACAGUCUACAGCCAUGGUCGcuagggggca
((((((.((((.((((((((..((((((((((((((.((....))....))))))))))))))..)))))))).)))))))))).

Structure

-      a    u        AU              ---a  a 
 gucucc uggu ACCGUGGC  UAGAUUGUUACUgu    gc a
 |||||| |||| ||||||||  ||||||||||||||    ||  
 cggggg aucG UGGUACCG  AUCUGACAAUggcg    cg c
a      -    C        AC              acca  u 

Annotation confidence High

Comments

This Tetraodon miRNA sequence is predicted based on homology with a verified zebrafish sequence (Mihaela Zavolan, personal communication).

Genome context

Un_random: 63608560-63608644 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from tni-mir-132-1

Mature tni-miR-132-5p

• Accession: MIMAT0052973
• Description: Tetraodon nigroviridis tni-miR-132-5p mature miRNA
• Sequence: 13 - ACCGUGGCAUUAGAUUGUUACU - 34
• Evidence: not_experimental

Mature tni-miR-132-3p

• Accession: MIMAT0003060
• Description: Tetraodon nigroviridis tni-miR-132-3p mature miRNA
• Sequence: 54 - UAACAGUCUACAGCCAUGGUCG - 75
• Evidence: not_experimental

References