Stem-loop fru-mir-125b

Accession

MI0003401

Description

Fugu rubripes fru-mir-125b precursor miRNA

Literature search

1 open access papers mention fru-mir-125b
(2 sentences)

Sequence

1674875 reads, 18494.0 reads per million, 12 experiments

cucucauUCCCUGAGACCCUAACUUGUGAcguugugcugugaugugcACGGGUUGGGUUCUUGGGAGCUg
......(((((.((((.((((((((((((((((.......))))).))))))))))).)))))))))...

Structure

cucuca     U    C           -     gu 
      uUCCC GAGA CCUAACUUGUG Acguu  g
      ||||| |||| ||||||||||| |||||  c
      GAGGG UUCU GGGUUGGGCAc uguag  u
---gUC     -    U           g     ug 

Annotation confidence High

Comments

This Fugu miRNA sequence is predicted based on homology with a verified zebrafish sequence (Mihaela Zavolan, personal communication).

Genome context

ref|NC_042299.1|: 13475266-13475335 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from fru-mir-125b

Mature fru-miR-125b-5p

• Accession: MIMAT0003061
• Description: Fugu rubripes fru-miR-125b-5p mature miRNA
• Sequence: 8 - UCCCUGAGACCCUAACUUGUGA - 29
• Evidence: not_experimental

Mature fru-miR-125b-3p

• Accession: MIMAT0052900
• Description: Fugu rubripes fru-miR-125b-3p mature miRNA
• Sequence: 48 - ACGGGUUGGGUUCUUGGGAGCU - 69
• Evidence: not_experimental

References