Stem-loop tni-mir-125b

Accession

MI0003402

Description

Tetraodon nigroviridis tni-mir-125b precursor miRNA

Sequence

2016 reads, 74.0 reads per million, 3 experiments

guaccucucucauUCCCUGAGACCCUAACUUGUGAcguugugcugugaugugcACGGGUUGGGUUCUUGGGAGCUgcgaggggcgcucacacauc
((.((((((.(((((((.((((.((((((((((((((((.......))))).))))))))))).))))))))).)).)))))).)).........

Structure

---------  a      u  -     U    C           -     gu 
         gu ccucuc ca uUCCC GAGA CCUAACUUGUG Acguu  g
         || |||||| || ||||| |||| ||||||||||| |||||  c
         cg ggggag gU GAGGG UUCU GGGUUGGGCAc uguag  u
cuacacacu  c      c  C     -    U           g     ug 

Annotation confidence High

Comments

This Tetraodon miRNA sequence is predicted based on homology with a verified zebrafish sequence (Mihaela Zavolan, personal communication).

Genome context

7: 5613623-5613717 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from tni-mir-125b

Mature tni-miR-125b-5p

• Accession: MIMAT0003062
• Description: Tetraodon nigroviridis tni-miR-125b-5p mature miRNA
• Sequence: 14 - UCCCUGAGACCCUAACUUGUGA - 35
• Evidence: not_experimental

Mature tni-miR-125b-3p

• Accession: MIMAT0052974
• Description: Tetraodon nigroviridis tni-miR-125b-3p mature miRNA
• Sequence: 54 - ACGGGUUGGGUUCUUGGGAGCU - 75
• Evidence: not_experimental

References