Stem-loop fru-mir-29a-2

Accession

MI0003403

Description

Fugu rubripes fru-mir-29a-2 precursor miRNA

Sequence

30842 reads, 312.0 reads per million, 12 experiments

gaagacagucuuggacucccuuccccguccuccaccaaaagaugACUGAUUUCUUCUGGUGCUGAGAgucggcugcagccuucUAGCACCAUUUGAAAUCGGUUAuaaaacagugggucgauacau
((((..((((...))))..))))...(((.(((((......((((((((((((...(((((((.((((..(((....))))))))))))))...))))))))))))......)))))..)))....

Structure

gaagacagucuuggacucccuucccc   -c     caaaag            UUC       G    uc   u 
                          guc  uccac      augACUGAUUUC   UGGUGCU AGAg  ggc g
                          |||  |||||      ||||||||||||   ||||||| ||||  |||  
                          uag  gggug      uAUUGGCUAAAG   ACCACGA Ucuu  ccg c
----------------------uaca   cu     acaaaa            UUU       -    --   a 

Annotation confidence High

Comments

This Fugu miRNA sequence is predicted based on homology with a verified zebrafish sequence (Mihaela Zavolan, personal communication).

Genome context

ref|NC_042302.1|: 795355-795480 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from fru-mir-29a-2

Mature fru-miR-29a-2-5p

• Accession: MIMAT0052895
• Description: Fugu rubripes fru-miR-29a-2-5p mature miRNA
• Sequence: 45 - ACUGAUUUCUUCUGGUGCUGAGA - 67
• Evidence: not_experimental

Mature fru-miR-29a-3p

• Accession: MIMAT0003053
• Description: Fugu rubripes fru-miR-29a-3p mature miRNA
• Sequence: 84 - UAGCACCAUUUGAAAUCGGUUA - 105
• Evidence: not_experimental

References