Stem-loop tni-mir-29a-2

Accession

MI0003404

Description

Tetraodon nigroviridis tni-mir-29a-2 precursor miRNA

Literature search

1 open access papers mention tni-mir-29a-2
(3 sentences)

Sequence

261549 reads, 9581.0 reads per million, 3 experiments

uguuucuccaccaaaagaugACUGAUUUCCUCUGGUGCUUAGAgccgccugcagccuucUAGCACCAUUUGAAAUCGGUUAuaaaacuguggaucagugc
......(((((......((((((((((((...(((((((.((((..((.....)).)))))))))))...))))))))))))......))))).......

Structure

-uguuuc     caaaag            CUC       U    cc  c 
       uccac      augACUGAUUUC   UGGUGCU AGAg  gc u
       |||||      ||||||||||||   ||||||| ||||  || g
       aggug      uAUUGGCUAAAG   ACCACGA Ucuu  cg c
cgugacu     ucaaaa            UUU       -    -c  a 

Annotation confidence High

Comments

This Tetraodon miRNA sequence is predicted based on homology with a verified zebrafish sequence (Mihaela Zavolan, personal communication).

Genome context

Un_random: 8673465-8673564 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from tni-mir-29a-2

Mature tni-miR-29a-2-5p

• Accession: MIMAT0052970
• Description: Tetraodon nigroviridis tni-miR-29a-2-5p mature miRNA
• Sequence: 21 - ACUGAUUUCCUCUGGUGCUUAGA - 43
• Evidence: not_experimental

Mature tni-miR-29a-3p

• Accession: MIMAT0003054
• Description: Tetraodon nigroviridis tni-miR-29a-3p mature miRNA
• Sequence: 60 - UAGCACCAUUUGAAAUCGGUUA - 81
• Evidence: not_experimental

References