Stem-loop fru-mir-29b-1

Accession

MI0003405

Description

Fugu rubripes fru-mir-29b-1 precursor miRNA

Sequence

10610 reads, 105.0 reads per million, 12 experiments

uccagaagCUGGUUUCAUGUGGUGGUUUAGAugugucuucccucuugucUAGCACCAUUUGAAAUCAGUGUUcuugg
.((((((((((((((((.((((((..((((((..(........)..)))))))))))).)))))))))).))).)))

Structure

u   -   -          U      GU      gu ucu 
 cca gaa gCUGGUUUCA GUGGUG  UUAGAu  g   u
 ||| ||| |||||||||| ||||||  ||||||  |    
 ggu cUU UGACUAAAGU UACCAC  GAUcug  c   c
-   u   G          U      --      uu ucc 

Annotation confidence High

Comments

This Fugu miRNA sequence is predicted based on homology with a verified zebrafish sequence (Mihaela Zavolan, personal communication).

Genome context

ref|NC_042302.1|: 795511-795587 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from fru-mir-29b-1

Mature fru-miR-29b-1-5p

• Accession: MIMAT0052897
• Description: Fugu rubripes fru-miR-29b-1-5p mature miRNA
• Sequence: 9 - CUGGUUUCAUGUGGUGGUUUAGA - 31
• Evidence: not_experimental

Mature fru-miR-29b-3p

• Accession: MIMAT0003055
• Description: Fugu rubripes fru-miR-29b-3p mature miRNA
• Sequence: 50 - UAGCACCAUUUGAAAUCAGUGUU - 72
• Evidence: not_experimental

References