Stem-loop tni-mir-29b-1

Accession

MI0003406

Description

Tetraodon nigroviridis tni-mir-29b-1 precursor miRNA

Literature search

1 open access papers mention tni-mir-29b-1
(3 sentences)

Sequence

86052 reads, 3152.0 reads per million, 3 experiments

cuccagaagCUGGUUUCACGUGGUGGUUUAGAUgugucuccucaucgucUAGCACCAUUUGAAAUCAGUGUucuugggg
((((((((((((((((((.((((((..(((((((((......)).))))))))))))).)))))))))).))).)))))

Structure

     -   -          C      GU       -  uc 
cucca gaa gCUGGUUUCA GUGGUG  UUAGAUg ug  u
||||| ||| |||||||||| ||||||  ||||||| ||   
ggggu cuU UGACUAAAGU UACCAC  GAUcugc ac  c
     u   G          U      --       u  uc 

Annotation confidence High

Comments

This Tetraodon miRNA sequence is predicted based on homology with a verified zebrafish sequence (Mihaela Zavolan, personal communication).

Genome context

Un_random: 8673324-8673402 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from tni-mir-29b-1

Mature tni-miR-29b-1-5p

• Accession: MIMAT0052972
• Description: Tetraodon nigroviridis tni-miR-29b-1-5p mature miRNA
• Sequence: 10 - CUGGUUUCACGUGGUGGUUUAGAU - 33
• Evidence: not_experimental

Mature tni-miR-29b-3p

• Accession: MIMAT0003056
• Description: Tetraodon nigroviridis tni-miR-29b-3p mature miRNA
• Sequence: 50 - UAGCACCAUUUGAAAUCAGUGU - 71
• Evidence: not_experimental

References