Stem-loop tni-let-7a-1

Accession

MI0003408

Description

Tetraodon nigroviridis tni-let-7a-1 precursor miRNA

Sequence

11130732 reads, 409297.0 reads per million, 3 experiments

cagggUGAGGUAGUAGGUUGUAUAGUUgagagugacaccacaggagauaaCUGUACAGCCUCCUAGCUUUCCcu
.((((.(((.(((.((((((((((((((...(((....)))......)))))))))))))).))).))).))))

Structure

c    U   G   U              ---aga   a 
 aggg GAG UAG AGGUUGUAUAGUUg      gug c
 |||| ||| ||| ||||||||||||||      |||  
 ucCC UUC AUC UCCGACAUGUCaau      cac a
-    U   G   C              agagga   c 

Annotation confidence Not enough data

Comments

This Tetraodon miRNA sequence is predicted based on homology with a verified zebrafish sequence (Mihaela Zavolan, personal communication).

Genome context

7: 5619181-5619254 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from tni-let-7a-1

Mature tni-let-7a-5p

• Accession: MIMAT0002929
• Description: Tetraodon nigroviridis tni-let-7a-5p mature miRNA
• Sequence: 6 - UGAGGUAGUAGGUUGUAUAGUU - 27
• Evidence: not_experimental

Mature tni-let-7a-1-3p

• Accession: MIMAT0052940
• Description: Tetraodon nigroviridis tni-let-7a-1-3p mature miRNA
• Sequence: 51 - CUGUACAGCCUCCUAGCUUUCC - 72
• Evidence: not_experimental

References