Stem-loop fru-mir-100

Accession

MI0003409

Description

Fugu rubripes fru-mir-100 precursor miRNA

Literature search

2 open access papers mention fru-mir-100
(41 sentences)

Sequence

13896848 reads, 150363.0 reads per million, 12 experiments

cacaAACCCGUAGAUCCGAACUUGUGgugacuggccgcaCAAGCUCGUAUCUAUAGGUAUgug
((((.(((.((((((.(((.((((((.((......)))))))).))).)))))).))).))))

Structure

    A   C      C   A      g  ac 
caca ACC GUAGAU CGA CUUGUG ug  u
|||| ||| |||||| ||| |||||| ||   
gugU UGG UAUCUA GCU GAACac gc  g
    A   A      U   C      -  cg 

Annotation confidence High

Comments

This Fugu miRNA sequence is predicted based on homology with a verified zebrafish sequence (Mihaela Zavolan, personal communication).

Genome context

ref|NC_042299.1|: 13468943-13469005 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from fru-mir-100

Mature fru-miR-100-5p

• Accession: MIMAT0003063
• Description: Fugu rubripes fru-miR-100-5p mature miRNA
• Sequence: 5 - AACCCGUAGAUCCGAACUUGUG - 26
• Evidence: not_experimental

Mature fru-miR-100-3p

• Accession: MIMAT0052901
• Description: Fugu rubripes fru-miR-100-3p mature miRNA
• Sequence: 40 - CAAGCUCGUAUCUAUAGGUAU - 60
• Evidence: not_experimental

References