Stem-loop tni-mir-100-1

Accession

MI0003410

Description

Tetraodon nigroviridis tni-mir-100-1 precursor miRNA

Sequence

2171 reads, 79.0 reads per million, 3 experiments

cacaAACCCGUAGAUCCGAACUUGUGgugacuggccgcaCAAGCUCGUAUCUAUAGGUAUgug
((((.(((.((((((.(((.((((((.((......)))))))).))).)))))).))).))))

Structure

    A   C      C   A      g  ac 
caca ACC GUAGAU CGA CUUGUG ug  u
|||| ||| |||||| ||| |||||| ||   
gugU UGG UAUCUA GCU GAACac gc  g
    A   A      U   C      -  cg 

Annotation confidence High

Comments

This Tetraodon miRNA sequence is predicted based on homology with a verified zebrafish sequence (Mihaela Zavolan, personal communication).

Genome context

7: 5619635-5619697 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from tni-mir-100-1

Mature tni-miR-100-5p

• Accession: MIMAT0003064
• Description: Tetraodon nigroviridis tni-miR-100-5p mature miRNA
• Sequence: 5 - AACCCGUAGAUCCGAACUUGUG - 26
• Evidence: not_experimental

Mature tni-miR-100-3p

• Accession: MIMAT0052975
• Description: Tetraodon nigroviridis tni-miR-100-3p mature miRNA
• Sequence: 40 - CAAGCUCGUAUCUAUAGGUAU - 60
• Evidence: not_experimental

References