Stem-loop fru-mir-24-1

Accession

MI0003413

Description

Fugu rubripes fru-mir-24-1 precursor miRNA

Sequence

249080 reads, 3107.0 reads per million, 12 experiments

ggguugugcccuccugUGCCUACUGAACUGGUAUCAGUgucauacuggaaaacUGGCUCAGUUCAGCAGGAACaggagu
((((...))))((((((.(((.(((((((((..(((((.((......))..))))).))))))))).))).))))))..

Structure

ggguugugccc      G   A         UA     -g  au 
           uccugU CCU CUGAACUGG  UCAGU  uc  a
           |||||| ||| |||||||||  |||||  ||   
           aggaCA GGA GACUUGACU  GGUca  ag  c
---------ug      A   C         -C     aa  gu 

Annotation confidence High

Comments

This Fugu miRNA sequence is predicted based on homology with a verified zebrafish sequence (Mihaela Zavolan, personal communication).

Genome context

ref|NC_042304.1|: 9473467-9473545 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from fru-mir-24-1

Mature fru-miR-24-5p

• Accession: MIMAT0003384
• Description: Fugu rubripes fru-miR-24-5p mature miRNA
• Sequence: 17 - UGCCUACUGAACUGGUAUCAGU - 38
• Evidence: not_experimental

Mature fru-miR-24-3p

• Accession: MIMAT0003065
• Description: Fugu rubripes fru-miR-24-3p mature miRNA
• Sequence: 54 - UGGCUCAGUUCAGCAGGAAC - 73
• Evidence: not_experimental

References