Stem-loop tni-mir-24-1

Accession

MI0003414

Description

Tetraodon nigroviridis tni-mir-24-1 precursor miRNA

Sequence

21220 reads, 775.0 reads per million, 3 experiments

cuuccuGUGCCUACUGAGCUGAUAUGCAguuguacagaaccacUGGCUCAGUUCAGCAGGAACAGgaguc
.(((((((.(((.(((((((((....((((.((.....)).))))..))))))))).))).)))))))..

Structure

-c       G   A         UAUG    u  a 
  uuccuGU CCU CUGAGCUGA    CAgu gu c
  ||||||| ||| |||||||||    |||| || a
  gagGACA GGA GACUUGACU    GUca ca g
cu       A   C         --CG    c  a 

Annotation confidence High

Comments

This Tetraodon miRNA sequence is predicted based on homology with a verified zebrafish sequence (Mihaela Zavolan, personal communication).

Genome context

12: 8518114-8518183 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from tni-mir-24-1

Mature tni-miR-24-1-5p

• Accession: MIMAT0052976
• Description: Tetraodon nigroviridis tni-miR-24-1-5p mature miRNA
• Sequence: 7 - GUGCCUACUGAGCUGAUAUGCA - 28
• Evidence: not_experimental

Mature tni-miR-24-3p

• Accession: MIMAT0003066
• Description: Tetraodon nigroviridis tni-miR-24-3p mature miRNA
• Sequence: 44 - UGGCUCAGUUCAGCAGGAACAG - 65
• Evidence: not_experimental

References