Stem-loop fru-mir-23a-1

Accession

MI0003415

Description

Fugu rubripes fru-mir-23a-1 precursor miRNA

Sequence

113073 reads, 1454.0 reads per million, 12 experiments

gcuguggcggggaGGGUUCCUGGCACCGUGAUUUgaugcacaaagacaaacaaaaAUCACAUUGCCAGGGAUUUCCAcccuuucacag
.((((((.((((.((((((((((((..(((((((...................)))))))..))))))))))..)).)))).))))))

Structure

g      c    a  --          CC       gaugcaca 
 cugugg gggg GG  GUUCCUGGCA  GUGAUUU        a
 |||||| |||| ||  ||||||||||  |||||||        a
 gacacu uccc CC  UAGGGACCGU  CACUAaa        g
-      u    A  UU          UA       aacaaaca 

Annotation confidence High

Comments

This Fugu miRNA sequence is predicted based on homology with a verified zebrafish sequence (Mihaela Zavolan, personal communication).

Genome context

ref|NC_042304.1|: 9471877-9471964 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from fru-mir-23a-1

Mature fru-miR-23a-1-5p

• Accession: MIMAT0052822
• Description: Fugu rubripes fru-miR-23a-1-5p mature miRNA
• Sequence: 14 - GGGUUCCUGGCACCGUGAUUU - 34
• Evidence: not_experimental

Mature fru-miR-23a-3p

• Accession: MIMAT0002912
• Description: Fugu rubripes fru-miR-23a-3p mature miRNA
• Sequence: 56 - AUCACAUUGCCAGGGAUUUCCA - 77
• Evidence: not_experimental

References