Stem-loop tni-mir-23a-1

Accession

MI0003416

Description

Tetraodon nigroviridis tni-mir-23a-1 precursor miRNA

Sequence

32237 reads, 1182.0 reads per million, 3 experiments

gcuguggcggggaGGGUUCCUGGCACCGUGAUUUgaugcacaaagacaaacaaaaAUCACAUUGCCAGGGAUUUCCAcccuuucacag
.((((((.((((.((((((((((((..(((((((...................)))))))..))))))))))..)).)))).))))))

Structure

g      c    a  --          CC       gaugcaca 
 cugugg gggg GG  GUUCCUGGCA  GUGAUUU        a
 |||||| |||| ||  ||||||||||  |||||||        a
 gacacu uccc CC  UAGGGACCGU  CACUAaa        g
-      u    A  UU          UA       aacaaaca 

Annotation confidence Not enough data

Comments

This Tetraodon miRNA sequence is predicted based on homology with a verified zebrafish sequence (Mihaela Zavolan, personal communication).

Genome context

1: 16058791-16058878 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from tni-mir-23a-1

Mature tni-miR-23a-1-5p

• Accession: MIMAT0052979
• Description: Tetraodon nigroviridis tni-miR-23a-1-5p mature miRNA
• Sequence: 14 - GGGUUCCUGGCACCGUGAUUU - 34
• Evidence: not_experimental

Mature tni-miR-23a-3p

• Accession: MIMAT0002913
• Description: Tetraodon nigroviridis tni-miR-23a-3p mature miRNA
• Sequence: 56 - AUCACAUUGCCAGGGAUUUCCA - 77
• Evidence: not_experimental

References