Stem-loop fru-mir-27e

Accession

MI0003417

Description

Fugu rubripes fru-mir-27e precursor miRNA

Sequence

346921 reads, 3584.0 reads per million, 12 experiments

cacuugcuaaaggcacCGAGCUUAGCUAAUUGGUGAGCauugaucccugcuauguguugUUCACAGUGGCUAAGUUCAGUGccugaggugaaauaguuga
...(((((..((((((.(((((((((((....(((((((..................)))))))..))))))))))).))))))..))))).........

Structure

------cac     aa      C           AUUG       uugauccc 
         uugcu  aggcac GAGCUUAGCUA    GUGAGCa        u
         |||||  |||||| |||||||||||    |||||||         
         agugg  uccGUG CUUGAAUCGGU    CACUUgu        g
aguugauaa     ag      A           --GA       uguguauc 

Annotation confidence High

Comments

This Fugu miRNA sequence is predicted based on homology with a verified zebrafish sequence (Mihaela Zavolan, personal communication).

Genome context

ref|NC_042304.1|: 9472271-9472370 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from fru-mir-27e

Mature fru-miR-27e-5p

• Accession: MIMAT0052902
• Description: Fugu rubripes fru-miR-27e-5p mature miRNA
• Sequence: 17 - CGAGCUUAGCUAAUUGGUGAGC - 38
• Evidence: not_experimental

Mature fru-miR-27e-3p

• Accession: MIMAT0003067
• Description: Fugu rubripes fru-miR-27e-3p mature miRNA
• Sequence: 60 - UUCACAGUGGCUAAGUUCAGUG - 81
• Evidence: not_experimental

References