Stem-loop fru-mir-1

Accession

MI0003423

Description

Fugu rubripes fru-mir-1 precursor miRNA

Literature search

1 open access papers mention fru-mir-1
(1 sentences)

Sequence

126404 reads, 1389.0 reads per million, 12 experiments

cuuaguguacauacuucuuuauguacccauaUGGACAUAUGAUAACUAUGGAAUGUAAAGAAGUAUGUAUucuugg
((.((.((((((((((((((((((..(((((.(............)))))).)))))))))))))))))).)).))

Structure

  u  u                  ac     U GACAU 
cu ag guacauacuucuuuaugu  ccaua G     A
|| || ||||||||||||||||||  ||||| |      
gg uc UAUGUAUGAAGAAAUGUA  GGUAU C     U
  u  u                  -A     - AAUAG 

Annotation confidence Medium

Comments

This Fugu miRNA sequence is predicted based on homology with a verified zebrafish sequence (Mihaela Zavolan, personal communication).

Genome context

ref|NC_042306.1|: 2873982-2874057 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from fru-mir-1

Mature fru-miR-1-5p

• Accession: MIMAT0061463
• Description: Fugu rubripes fru-miR-1-5p mature miRNA
• Sequence: 32 - UGGACAUAUGAUAACUAUGGAAU - 54
• Evidence: not_experimental

Mature fru-miR-1-3p

• Accession: MIMAT0003071
• Description: Fugu rubripes fru-miR-1-3p mature miRNA
• Sequence: 49 - UGGAAUGUAAAGAAGUAUGUAU - 70
• Evidence: not_experimental

References