Accession
MI0003429
Description
Fugu rubripes
fru-mir-23a-3 precursor miRNA
Sequence
134539
reads,
1717.0
reads per million, 12 experiments
ucuguuggccaggGGGAUUCCUGGCAGAGUGAUUUUuagacuacaggacugaAUCACAUUGCCAGGGAUUUCCAauggcu
......(((((.(((((((((((((((.(((((((...............))))))).)))))))))))))))..)))))
......(((((.(((((((((((((((.(((((((...............))))))).)))))))))))))))..)))))
Structure
ucuguu -g A Uuagac
ggcca gGGGAUUCCUGGCAG GUGAUUU u
||||| ||||||||||||||| ||||||| a
ucggu CCUUUAGGGACCGUU CACUAag c
------ aA A ucagga
Annotation confidence
High
Do you think this miRNA is real?
Comments
This Fugu miRNA sequence is predicted based on homology with a verified zebrafish sequence (Mihaela Zavolan, personal communication).
Genome context
ref|NC_042289.1|: 6804318-6804397 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from fru-mir-23a-3
| Name | Accession | Chromosome | Start | End | Strand | Confidence |
|---|
Database links
Mature fru-miR-23a-3-5p
| Accession | MIMAT0052823 |
| Description | Fugu rubripes fru-miR-23a-3-5p mature miRNA |
| Sequence | 14 - GGGAUUCCUGGCAGAGUGAUUUU - 36 |
| Evidence | not_experimental |
Mature fru-miR-23a-3p
| Accession | MIMAT0002912 |
| Description | Fugu rubripes fru-miR-23a-3p mature miRNA |
| Sequence | 53 - AUCACAUUGCCAGGGAUUUCCA - 74 |
| Evidence | not_experimental |
References
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