Accession
MI0003430
Description
Tetraodon nigroviridis
tni-mir-23a-3 precursor miRNA
Sequence
37664
reads,
1381.0
reads per million, 3 experiments
ucuguuggccaggGGAAUUCCUGGCAGAGUGAUUUUugagacuacaggacugaAUCACAUUGCCAGGGAUUUCCAauggcu
......(((((.(((((((((((((((.(((((((................))))))).)))))))))))))))..)))))
......(((((.(((((((((((((((.(((((((................))))))).)))))))))))))))..)))))
Structure
ucuguu -g A Uugagac
ggcca gGGAAUUCCUGGCAG GUGAUUU u
||||| ||||||||||||||| |||||||
ucggu CCUUUAGGGACCGUU CACUAag a
------ aA A ucaggac
Annotation confidence
High
Do you think this miRNA is real?
Comments
This Tetraodon miRNA sequence is predicted based on homology with a verified zebrafish sequence (Mihaela Zavolan, personal communication).
Genome context
3: 8969961-8970041 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from tni-mir-23a-3
| Name | Accession | Chromosome | Start | End | Strand | Confidence |
|---|
Database links
Mature tni-miR-23a-3-5p
| Accession | MIMAT0052978 |
| Description | Tetraodon nigroviridis tni-miR-23a-3-5p mature miRNA |
| Sequence | 14 - GGAAUUCCUGGCAGAGUGAUUUU - 36 |
| Evidence | not_experimental |
Mature tni-miR-23a-3p
| Accession | MIMAT0002913 |
| Description | Tetraodon nigroviridis tni-miR-23a-3p mature miRNA |
| Sequence | 54 - AUCACAUUGCCAGGGAUUUCCA - 75 |
| Evidence | not_experimental |
References
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