Stem-loop fru-mir-27c

Accession

MI0003431

Description

Fugu rubripes fru-mir-27c precursor miRNA

Literature search

1 open access papers mention fru-mir-27c
(1 sentences)

Sequence

405784 reads, 5176.0 reads per million, 12 experiments

ggcuguguggcggCAGGACUUAACCCACAUGUGAGCAgugagugugugccaugUUCACAGUGGUUAAGUUCUGCcgcc
........(((((((((((((((((.((.((((((((.((.((....)))))))))))))))))))))))))))))))

Structure

ggcugugu                 C  A        g  a  g 
        ggcggCAGGACUUAACC AC UGUGAGCA ug gu u
        ||||||||||||||||| || |||||||| || ||  
        ccgcCGUCUUGAAUUGG UG ACACUUgu ac cg g
--------                 -  -        -  -  u 

Annotation confidence High

Comments

This Fugu miRNA sequence is predicted based on homology with a verified zebrafish sequence (Mihaela Zavolan, personal communication).

Genome context

ref|NC_042289.1|: 6804530-6804607 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from fru-mir-27c

Mature fru-miR-27c-5p

• Accession: MIMAT0052907
• Description: Fugu rubripes fru-miR-27c-5p mature miRNA
• Sequence: 14 - CAGGACUUAACCCACAUGUGAGCA - 37
• Evidence: not_experimental

Mature fru-miR-27c-3p

• Accession: MIMAT0003077
• Description: Fugu rubripes fru-miR-27c-3p mature miRNA
• Sequence: 54 - UUCACAGUGGUUAAGUUCUGC - 74
• Evidence: not_experimental

References