Stem-loop fru-mir-24-2

Accession

MI0003433

Description

Fugu rubripes fru-mir-24-2 precursor miRNA

Sequence

254240 reads, 3205.0 reads per million, 12 experiments

gggucagucuccugUGCCUGCUGUGCUGAUAAUCAgugugugacguuggcUGGCUCAGUUCAGCAGGAACaggggacugguc
.((((((((((((((.(((((((.(((((...(((((...........))))).))))).))))))).))))))))))))))

Structure

g              G       U     UAA     gugu 
 ggucagucuccugU CCUGCUG GCUGA   UCAgu    g
 |||||||||||||| ||||||| |||||   |||||    a
 cuggucaggggaCA GGACGAC UGACU   GGUcg    c
-              A       U     --C     guug 

Annotation confidence High

Comments

This Fugu miRNA sequence is predicted based on homology with a verified zebrafish sequence (Mihaela Zavolan, personal communication).

Genome context

ref|NC_042289.1|: 6805482-6805563 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from fru-mir-24-2

Mature fru-miR-24-2-5p

• Accession: MIMAT0052908
• Description: Fugu rubripes fru-miR-24-2-5p mature miRNA
• Sequence: 15 - UGCCUGCUGUGCUGAUAAUCA - 35
• Evidence: not_experimental

Mature fru-miR-24-3p

• Accession: MIMAT0003065
• Description: Fugu rubripes fru-miR-24-3p mature miRNA
• Sequence: 51 - UGGCUCAGUUCAGCAGGAAC - 70
• Evidence: not_experimental

References