Stem-loop fru-mir-138

Accession

MI0003435

Description

Fugu rubripes fru-mir-138 precursor miRNA

Sequence

24787 reads, 239.0 reads per million, 12 experiments

gcugcAGCUGGUGUUGUGAAUCAGGCCgaugacagacaccuccuauaagccgGCUAUUUCACAACACCAGGGUggcacc
(((((..(((((((((((((...(((((......................)))))..))))))))))))).)))))...

Structure

---     AG             UCA     augacagaca 
   gcugc  CUGGUGUUGUGAA   GGCCg          c
   |||||  |||||||||||||   |||||           
   cggUG  GACCACAACACUU   UCGgc          c
cca     -G             -UA     cgaauauccu 

Annotation confidence High

Comments

This Fugu miRNA sequence is predicted based on homology with a verified zebrafish sequence (Mihaela Zavolan, personal communication).

Genome context

ref|NC_042293.1|: 907624-907702 [+]

Mature fru-miR-138-5p

• Accession: MIMAT0003079
• Description: Fugu rubripes fru-miR-138-5p mature miRNA
• Sequence: 6 - AGCUGGUGUUGUGAAUCAGGCC - 27
• Evidence: not_experimental

Mature fru-miR-138-3p

• Accession: MIMAT0052909
• Description: Fugu rubripes fru-miR-138-3p mature miRNA
• Sequence: 53 - GCUAUUUCACAACACCAGGGU - 73
• Evidence: not_experimental

References