Stem-loop fru-mir-125a

Accession

MI0003439

Description

Fugu rubripes fru-mir-125a precursor miRNA

Literature search

3 open access papers mention fru-mir-125a
(7 sentences)

Sequence

1262250 reads, 14855.0 reads per million, 12 experiments

cuucagugUCCCUGAGACCCUUAACCUGUGaugauaugaaaggucaCAGGUGAGGUCCUUGGGAAC
........((((.(((..(((((.((((((((..........)))))))))))))..)))))))..

Structure

cuucagug    U   AC     A        gaua 
        UCCC GAG  CCUUA CCUGUGau    u
        |||| |||  ||||| ||||||||     
        AGGG UUC  GGAGU GGACacug    g
------CA    -   CU     -        gaaa 

Annotation confidence High

Comments

This Fugu miRNA sequence is predicted based on homology with a verified zebrafish sequence (Mihaela Zavolan, personal communication).

Genome context

ref|NC_042296.1|: 11760704-11760769 [+]

Mature fru-miR-125a-5p

• Accession: MIMAT0003081
• Description: Fugu rubripes fru-miR-125a-5p mature miRNA
• Sequence: 9 - UCCCUGAGACCCUUAACCUGUG - 30
• Evidence: not_experimental

Mature fru-miR-125a-3p

• Accession: MIMAT0052910
• Description: Fugu rubripes fru-miR-125a-3p mature miRNA
• Sequence: 47 - CAGGUGAGGUCCUUGGGAAC - 66
• Evidence: not_experimental

References