Stem-loop fru-mir-92-1

Accession

MI0003445

Description

Fugu rubripes fru-mir-92-1 precursor miRNA

Sequence

940800 reads, 16438.0 reads per million, 12 experiments

cuuuccugugcAGGUUGGGAGAGGUAGCAAUGCUcagagauuaugcggUAUUGCACUUGUCCCGGCCUGUggaggaagg
(((((((.((((((((((((.((((.((((((((((.......)).)))))))))))).)))))))))))).)))))))

Structure

       g            G    A        -  ga 
cuuuccu ugcAGGUUGGGA AGGU GCAAUGCU ca  g
||||||| |||||||||||| |||| |||||||| ||  a
ggaagga gUGUCCGGCCCU UUCA CGUUAUgg gu  u
       g            G    -        c  au 

Annotation confidence High

Comments

This Fugu miRNA sequence is predicted based on homology with a verified zebrafish sequence (Mihaela Zavolan, personal communication).

Genome context

ref|NC_042285.1|: 18584488-18584566 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from fru-mir-92-1

Mature fru-miR-92-1-5p

• Accession: MIMAT0052831
• Description: Fugu rubripes fru-miR-92-1-5p mature miRNA
• Sequence: 12 - AGGUUGGGAGAGGUAGCAAUGCU - 34
• Evidence: not_experimental

Mature fru-miR-92-3p

• Accession: MIMAT0002924
• Description: Fugu rubripes fru-miR-92-3p mature miRNA
• Sequence: 49 - UAUUGCACUUGUCCCGGCCUGU - 70
• Evidence: not_experimental

References