Stem-loop tni-mir-92-1

Accession

MI0003446

Description

Tetraodon nigroviridis tni-mir-92-1 precursor miRNA

Sequence

153879 reads, 5634.0 reads per million, 3 experiments

cuuuccuguacAGGUUGGGAGAGGUAGCAAUGCUcggaguucauguggUAUUGCACUUGUCCCGGCCUGUggag
.....((.((((((((((((.((((.(((((((.((.(.....).))))))))))))).)))))))))))).))

Structure

cuuuc  g            G    A       U  g g 
     cu uacAGGUUGGGA AGGU GCAAUGC cg a u
     || |||||||||||| |||| ||||||| || | u
     ga gUGUCCGGCCCU UUCA CGUUAUg gu u c
-----  g            G    -       -  g a 

Annotation confidence High

Comments

This Tetraodon miRNA sequence is predicted based on homology with a verified zebrafish sequence (Mihaela Zavolan, personal communication).

Genome context

2: 12892714-12892787 [+]

Clustered miRNAs

4 other miRNAs are < 10 kb from tni-mir-92-1

Mature tni-miR-92-1-5p

• Accession: MIMAT0052938
• Description: Tetraodon nigroviridis tni-miR-92-1-5p mature miRNA
• Sequence: 12 - AGGUUGGGAGAGGUAGCAAUGCU - 34
• Evidence: not_experimental

Mature tni-miR-92-3p

• Accession: MIMAT0002925
• Description: Tetraodon nigroviridis tni-miR-92-3p mature miRNA
• Sequence: 49 - UAUUGCACUUGUCCCGGCCUGU - 70
• Evidence: not_experimental

References