Stem-loop fru-mir-10c

Accession

MI0003449

Description

Fugu rubripes fru-mir-10c precursor miRNA

Sequence

351712 reads, 4700.0 reads per million, 12 experiments

cugucuucuauaucUACCCUGUAGAUCCGGAUUUGUguaaaaaucauuaaagcaaucaCAAAUUCGCUUCUAGGGGAGUAuauaguggauuuauacacgacg
..((((.((((((((.((((.((((..((((((((((...................))))))))))..)))))))))).)))))).))))............

Structure

----------cu    u      -  A    G    UC          uaaaaauc 
            gucu cuauau cU CCCU UAGA  CGGAUUUGUg        a
            |||| |||||| || |||| ||||  ||||||||||        u
            uagg gauauA GA GGGG AUCU  GCUUAAACac        u
gcagcacauauu    u      U  -    -    UC          uaacgaaa 

Annotation confidence High

Comments

This Fugu miRNA sequence is predicted based on homology with a verified zebrafish sequence (Mihaela Zavolan, personal communication).

Genome context

ref|NC_042289.1|: 2090539-2090640 [+]

Mature fru-miR-10c-5p

• Accession: MIMAT0003087
• Description: Fugu rubripes fru-miR-10c-5p mature miRNA
• Sequence: 15 - UACCCUGUAGAUCCGGAUUUGU - 36
• Evidence: not_experimental

Mature fru-miR-10c-3p

• Accession: MIMAT0052912
• Description: Fugu rubripes fru-miR-10c-3p mature miRNA
• Sequence: 59 - CAAAUUCGCUUCUAGGGGAGUA - 80
• Evidence: not_experimental

References