Stem-loop fru-mir-183

Accession

MI0003453

Description

Fugu rubripes fru-mir-183 precursor miRNA

Literature search

2 open access papers mention fru-mir-183
(36 sentences)

Sequence

80348 reads, 819.0 reads per million, 12 experiments

cugugUAUGGCACUGGUAGAAUUCACUGugagagcucacuaucagUGAAUUACCAUAGGGCCAUAAacag
((((.((((((..(((((..((((((((..((......))..)))))))))))))....)))))).))))

Structure

    g      --AC     GA        ug  ag 
cugu UAUGGC    UGGUA  AUUCACUG  ag  c
|||| ||||||    |||||  ||||||||  ||   
gaca AUACCG    ACCAU  UAAGUgac  uc  u
    A      GGAU     --        ua  ac 

Annotation confidence High

Comments

This Fugu miRNA sequence is predicted based on homology with a verified zebrafish sequence (Mihaela Zavolan, personal communication).

Genome context

ref|NC_042302.1|: 5942870-5942939 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from fru-mir-183

Mature fru-miR-183-5p

• Accession: MIMAT0003089
• Description: Fugu rubripes fru-miR-183-5p mature miRNA
• Sequence: 6 - UAUGGCACUGGUAGAAUUCACUG - 28
• Evidence: not_experimental

Mature fru-miR-183-3p

• Accession: MIMAT0052913
• Description: Fugu rubripes fru-miR-183-3p mature miRNA
• Sequence: 46 - UGAAUUACCAUAGGGCCAUAA - 66
• Evidence: not_experimental

References