Stem-loop fru-mir-182

Accession

MI0003457

Description

Fugu rubripes fru-mir-182 precursor miRNA

Literature search

1 open access papers mention fru-mir-182
(21 sentences)

Sequence

81413 reads, 802.0 reads per million, 12 experiments

ugUUUGGCAAUGGUAGAACUCACAcuggugagguagauggauccggUGGUUCUAGACUUGCCAACUAcugcu
...(((((((...((((((...((((((..............))))))))))))...)))))))........

Structure

-----ugU       UGG      UCA      ugaggu 
        UUGGCAA   UAGAAC   CAcugg      a
        |||||||   ||||||   ||||||       
        AACCGUU   AUCUUG   GUggcc      g
ucgucAUC       CAG      ---      uaggua 

Annotation confidence High

Comments

This Fugu miRNA sequence is predicted based on homology with a verified zebrafish sequence (Mihaela Zavolan, personal communication).

Genome context

ref|NC_042302.1|: 5942375-5942446 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from fru-mir-182

Mature fru-miR-182-5p

• Accession: MIMAT0052915
• Description: Fugu rubripes fru-miR-182-5p mature miRNA
• Sequence: 3 - UUUGGCAAUGGUAGAACUCACA - 24
• Evidence: not_experimental

Mature fru-miR-182-3p

• Accession: MIMAT0003093
• Description: Fugu rubripes fru-miR-182-3p mature miRNA
• Sequence: 47 - UGGUUCUAGACUUGCCAACUA - 67
• Evidence: not_experimental

References