Stem-loop tni-mir-152

Accession

MI0003468

Description

Tetraodon nigroviridis tni-mir-152 precursor miRNA

Sequence

110397 reads, 4044.0 reads per million, 3 experiments

cugcucaaacucugggcuAAGUUCUGUGAUACACUCUGAcugugaauggcuaugcuagUCAGUGCAUAACAGAACUUUGUcccgg
...........((((((.(((((((((.((.((((..(((((((........))).)))))))).)).))))))))).).)))))

Structure

cugcucaaacu     - u         G  A    CU    -   aau 
           cuggg c AAGUUCUGU AU CACU  GAcu gug   g
           ||||| | ||||||||| || ||||  |||| |||    
           ggccc G UUCAAGACA UA GUGA  CUga cgu   g
-----------     U U         A  C    --    u   auc 

Annotation confidence High

Comments

This Tetraodon miRNA sequence is predicted based on homology with a verified zebrafish sequence (Mihaela Zavolan, personal communication).

Genome context

Un_random: 5385288-5385372 [-]

Mature tni-miR-152-5p

• Accession: MIMAT0052986
• Description: Tetraodon nigroviridis tni-miR-152-5p mature miRNA
• Sequence: 19 - AAGUUCUGUGAUACACUCUGA - 39
• Evidence: not_experimental

Mature tni-miR-152-3p

• Accession: MIMAT0003104
• Description: Tetraodon nigroviridis tni-miR-152-3p mature miRNA
• Sequence: 59 - UCAGUGCAUAACAGAACUUUGU - 80
• Evidence: not_experimental

References