Stem-loop tni-mir-15a

Accession

MI0003470

Description

Tetraodon nigroviridis tni-mir-15a precursor miRNA

Sequence

107008 reads, 3920.0 reads per million, 3 experiments

cuggugaugcugUAGCAGCACGGAAUGGUUUGUGaguuacacugagauaCAAGCCAUGCUGUGCUGCCGCA
..........(((.(((((((((.((((((((((..(((...)))..)))))))))).))))))))).)))

Structure

cuggugaugc   A         A          ag   c 
          ugU GCAGCACGG AUGGUUUGUG  uua  
          ||| ||||||||| ||||||||||  ||| a
          ACG CGUCGUGUC UACCGAACau  agu  
----------   C         G          ag   c 

Annotation confidence High

Comments

This Tetraodon miRNA sequence is predicted based on homology with a verified zebrafish sequence (Mihaela Zavolan, personal communication).

Genome context

2: 11019282-11019352 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from tni-mir-15a

Mature tni-miR-15a-5p

• Accession: MIMAT0003106
• Description: Tetraodon nigroviridis tni-miR-15a-5p mature miRNA
• Sequence: 13 - UAGCAGCACGGAAUGGUUUGUG - 34
• Evidence: not_experimental

Mature tni-miR-15a-3p

• Accession: MIMAT0052987
• Description: Tetraodon nigroviridis tni-miR-15a-3p mature miRNA
• Sequence: 50 - CAAGCCAUGCUGUGCUGCCGCA - 71
• Evidence: not_experimental

References